Ribosomal protein S17



Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the small subunit of the bacterial ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, i.e. the crystal structure of Ribosomal protein S17 from Thermus thermophilus (2zm6, chain Q).

3D Structures of Ribosomal protein S17
Update June 2011

S17
1rip – TtRPS17 – NMR - Geobacillus stearothermophilus

1rq6 – RPS17 - Methanothermobacter

S17 in small ribosomal subunit
2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - Thermus thermophilus

2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq, 3pys, 3pyu - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment

3kc4 – EcRPS17 in 30S ribosomal subunit – Escherichia coli

3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3ofa, 3ofb, 3ofx, 3ofy, 3ofo, 3ofp, 3or9, 3ora - EcRPS17 in 30S ribosomal subunit+16S RRNA

1i94, 1fka - TtRPS17 in 30S ribosomal subunit+16S RRNA

1p87, 1p6g - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM

3bbn - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach

S17 in small + large ribosomal subunit
1ml5 - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM

S17 in small ribosomal subunit+ chain release factor
3mr8, 3ms0 – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA

3d5a, 3d5c - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA

2b64 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1

2b9m - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2

2x9r, 2x9t, 2wh1, 2wh3 - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA

3f1e, 3f1g - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA

S17 in small ribosomal subunit+tRNA+mRNA
2hgi - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet

2hgp - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA

2i2p, 2i2u - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA

2hgr - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA

1yl4 – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator

1pns – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA

1xnq, 1xnr - TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+A-site tRNA
2uxd, 2uxc - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA

1n32, 1n33 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA

1n34 - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA

1xmo, 1xmq - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA

2uxb - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+P-site tRNA
3i8g - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA

3i8h, 3i9b, 3i9d - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA

1ibk - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA

2wwl - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli

3i1q - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA

3i1s, 3i1z, 3i21 - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA

S17 in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA

S17 in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA

2b9o - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA

2qnh - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA

S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM

1jgo, 1jgp, 1jgq, 1gix - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA

3e1a, 3e1c - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA

S17 in small ribosomal subunit + antibiotics
1i95, 1i97, 2hhh, 2f4v - TtRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic

1hnx, 1hnw, 1hnz, 1fjg – TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic

2qbb, 2qb9, 1vs5, 1vs7, 2qan, 2qal, 2qou, 2qow, 2qoy, 2qp0, 2z4k, 2z4m, 3oaq, 3oar  - EcRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic

2j00, 2j02 - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA

2wdg, 2wdh, 2wdk, 2wdm - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin

3knj, 3knh - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin

3knl, 3knn - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin

S17 in small ribosomal subunit + ribosome recycling factor
2qbd, 2qbf – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor

3r8n, 3r8o – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA

2qbh, 2qbj - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin

2v46, 2v48 - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet

S17 in small ribosomal subunit + elongation factor
2wri, 2wrk - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G

2wrn, 2wrq - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4

3fic - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A

3izv – EcRPS17 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU

3izw – EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU

2y0u, 2y0w, 2y0y, 2y12, 2y10, 2y18, 2y14, 2y16 – TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU

3fih - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU

3huw, 3huy - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P

S17 in small ribosomal subunit + translation initiation factor
1i96 - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA

1hr0 - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA

S17 in small ribosomal subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA

1voq, 1vos, 1vov, 1vox, 1voz - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA

2xfz, 2xg1 - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA

3j00 – EcRPS17 + 16S RRNA + FTSQ + apolipoprotein A-I

S17 in small 40S ribosomal subunit + various proteins
2xzm, 2xzn – RPS17 in 40S ribosomal subunit+18S RRNA+RACK1 – Tetrahymena thermophila

3iz6 - RPS17 in 40S ribosomal subunit +RACK1+18S RRNA – wheat – Cryo-EM

2o2z, 3o30 - yRPS17 in 40S ribosomal subunit +RACK1

S17 in part of small ribosomal subunit
3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA

1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment